Setup | Name parsing | Name matching | Name resolution
Package: taxastand 2.0.0.9000
taxastand: Taxonomic Name Standardization
Standardizes taxonomic names by matching species names to entries in a user-supplied reference taxonomy, then resolving synonyms to their accepted names. Fuzzy matching on parsed name components (genus, epithet, author, infraspecific rank, etc.) allows for orthographic differences between the query and reference names. This facilitates reproducible joining of datasets that use different taxonomic synonyms for the same species.
Authors:
taxastand_2.0.0.9000.tar.gz
taxastand_2.0.0.9000.zip(r-4.7-any)taxastand_2.0.0.9000.zip(r-4.6-any)taxastand_2.0.0.9000.zip(r-4.5-any)
taxastand_2.0.0.9000.tgz(r-4.6-any)taxastand_2.0.0.9000.tgz(r-4.5-any)
taxastand_2.0.0.9000.tar.gz(r-4.7-any)taxastand_2.0.0.9000.tar.gz(r-4.6-any)
taxastand_2.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
taxastand/json (API)
| # Install 'taxastand' in R: |
| install.packages('taxastand', repos = c('https://joelnitta.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/joelnitta/taxastand/issues
Pkgdown/docs site:https://joelnitta.github.io
Datasets:
- filmy_taxonomy - Taxonomy of filmy ferns
Last updated from:42d47486dd. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 131 | ||
| source / vignettes | OK | 178 | ||
| linux-release | OK | 117 | ||
| macos-release | OK | 101 | ||
| macos-oldrel | OK | 115 | ||
| windows-devel | OK | 73 | ||
| windows-release | OK | 76 | ||
| windows-oldrel | OK | 65 | ||
| wasm-release | OK | 95 |
Exports:%>%ts_match_namests_parse_namests_resolve_names
Dependencies:assertthatclicpp11digestdplyrfsgenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Taxonomy of filmy ferns (family Hymenophyllaceae) | filmy_taxonomy |
| Match taxonomic names to a reference | ts_match_names |
| Parse taxonomic names | ts_parse_names |
| Resolve synonyms in taxonomic names | ts_resolve_names |