restez - Create and Query a Local Copy of 'GenBank' in R
Download large sections of 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> and generate a local SQL-based database. A user can then query this database using 'restez' functions or through 'rentrez' <https://CRAN.R-project.org/package=rentrez> wrappers.
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dnaentrezgenbanksequence
6.66 score 27 stars 1 dependents 226 scripts 276 downloadsrgnparser - Parse Scientific Names
Parse scientific names using 'gnparser' (<https://github.com/gnames/gnparser>), written in Go. 'gnparser' parses scientific names into their component parts; it utilizes a Parsing Expression Grammar specifically for scientific names.
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taxonomy
6.50 score 15 stars 1 dependents 118 scripts 270 downloads
dwctaxon - Edit and Validate Darwin Core Taxon Data
Edit and validate taxonomic data in compliance with Darwin Core standards (Darwin Core 'Taxon' class <https://dwc.tdwg.org/terms/#taxon>).
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database
6.07 score 9 stars 33 scripts 185 downloads
canaper - Categorical Analysis of Neo- And Paleo-Endemism
Provides functions to analyze the spatial distribution of biodiversity, in particular categorical analysis of neo- and paleo-endemism (CANAPE) as described in Mishler et al (2014) <doi:10.1038/ncomms5473>. 'canaper' conducts statistical tests to determine the types of endemism that occur in a study area while accounting for the evolutionary relationships of species.
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biodiversitycanape
5.68 score 8 stars 40 scripts 239 downloads
taxastand - Taxonomic Name Standardization
Matches species names to a taxonomic standard. Resolves synonyms consistently and reproducibly.
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databasetaxonomy
3.16 score 22 stars 13 scriptsftolr - Data for the Fern Tree of Life (FTOL)
Provides the Fern Tree of Life (FTOL) phylogeny and related data files.
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1.26 score 1 stars 18 scripts