restez - Create and Query a Local Copy of 'GenBank' in R
Download large sections of 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> and generate a local SQL-based database. A user can then query this database using 'restez' functions or through 'rentrez' <https://CRAN.R-project.org/package=rentrez> wrappers.
Last updated 7 months ago
dnaentrezgenbanksequence
6.84 score 25 stars 1 packages 185 scripts 222 downloads
dwctaxon - Edit and Validate Darwin Core Taxon Data
Edit and validate taxonomic data in compliance with Darwin Core standards (Darwin Core 'Taxon' class <https://dwc.tdwg.org/terms/#taxon>).
Last updated 4 months ago
database
6.34 score 6 stars 26 scripts 206 downloadsrgnparser - Parse Scientific Names
Parse scientific names using 'gnparser' (<https://github.com/gnames/gnparser>), written in Go. 'gnparser' parses scientific names into their component parts; it utilizes a Parsing Expression Grammar specifically for scientific names.
Last updated 11 months ago
taxonomy
5.82 score 12 stars 1 packages 91 scripts 329 downloads
canaper - Categorical Analysis of Neo- And Paleo-Endemism
Provides functions to analyze the spatial distribution of biodiversity, in particular categorical analysis of neo- and paleo-endemism (CANAPE) as described in Mishler et al (2014) <doi:10.1038/ncomms5473>. 'canaper' conducts statistical tests to determine the types of endemism that occur in a study area while accounting for the evolutionary relationships of species.
Last updated 2 years ago
biodiversitycanape
5.36 score 7 stars 22 scripts 156 downloads
taxastand - Taxonomic Name Standardization
Matches species names to a taxonomic standard. Resolves synonyms consistently and reproducibly.
Last updated 2 years ago
databasetaxonomy
3.04 score 20 stars 11 scriptsftolr - Data for the Fern Tree of Life (FTOL)
Provides the Fern Tree of Life (FTOL) phylogeny and related data files.
Last updated 22 days ago
2.26 score 12 scripts