restez - Create and Query a Local Copy of 'GenBank' in R

Download large sections of 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> and generate a local SQL-based database. A user can then query this database using 'restez' functions or through 'rentrez' <https://CRAN.R-project.org/package=rentrez> wrappers.

Last updated 5 months ago

dnaentrezgenbanksequence

25 stars 2.64 score 22 dependencies 1 dependents

rgnparser - Parse Scientific Names

Parse scientific names using 'gnparser' (<https://github.com/gnames/gnparser>), written in Go. 'gnparser' parses scientific names into their component parts; it utilizes a Parsing Expression Grammar specifically for scientific names.

Last updated 9 months ago

taxonomy

11 stars 2.07 score 27 dependencies 1 dependents

taxastand - Taxonomic Name Standardization

Matches species names to a taxonomic standard. Resolves synonyms consistently and reproducibly.

Last updated 2 years ago

databasetaxonomy

19 stars 1.69 score 28 dependencies

dwctaxon - Edit and Validate Darwin Core Taxon Data

Edit and validate taxonomic data in compliance with Darwin Core standards (Darwin Core 'Taxon' class <https://dwc.tdwg.org/terms/#taxon>).

Last updated 2 months ago

database

4 stars 1.53 score 22 dependencies

canaper - Categorical Analysis of Neo- And Paleo-Endemism

Provides functions to analyze the spatial distribution of biodiversity, in particular categorical analysis of neo- and paleo-endemism (CANAPE) as described in Mishler et al (2014) <doi:10.1038/ncomms5473>. 'canaper' conducts statistical tests to determine the types of endemism that occur in a study area while accounting for the evolutionary relationships of species.

Last updated 1 years ago

biodiversitycanape

7 stars 1.33 score 77 dependencies

ftolr - Data for the Fern Tree of Life (FTOL)

Provides the Fern Tree of Life (FTOL) phylogeny and related data files.

Last updated 6 months ago

0.23 score 6 dependencies