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restez - Create and Query a Local Copy of 'GenBank' in R

Download large sections of 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> and generate a local SQL-based database. A user can then query this database using 'restez' functions or through 'rentrez' <https://CRAN.R-project.org/package=rentrez> wrappers.

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dnaentrezgenbanksequence

6.70 score 28 stars 1 dependents 238 scripts 272 downloads

rgnparser - Parse Scientific Names

Parse scientific names using 'gnparser' (<https://github.com/gnames/gnparser>), written in Go. 'gnparser' parses scientific names into their component parts; it utilizes a Parsing Expression Grammar specifically for scientific names.

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taxonomy

6.35 score 15 stars 1 dependents 123 scripts 362 downloads

dwctaxon - Edit and Validate Darwin Core Taxon Data

Edit and validate taxonomic data in compliance with Darwin Core standards (Darwin Core 'Taxon' class <https://dwc.tdwg.org/terms/#taxon>).

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database

6.14 score 9 stars 38 scripts 246 downloads

canaper - Categorical Analysis of Neo- And Paleo-Endemism

Provides functions to analyze the spatial distribution of biodiversity, in particular categorical analysis of neo- and paleo-endemism (CANAPE) as described in Mishler et al (2014) <doi:10.1038/ncomms5473>. 'canaper' conducts statistical tests to determine the types of endemism that occur in a study area while accounting for the evolutionary relationships of species.

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biodiversitycanape

5.72 score 8 stars 44 scripts 310 downloads

taxastand - Taxonomic Name Standardization

Standardizes taxonomic names by matching species names to entries in a user-supplied reference taxonomy, then resolving synonyms to their accepted names. Fuzzy matching on parsed name components (genus, epithet, author, infraspecific rank, etc.) allows for orthographic differences between the query and reference names. This facilitates reproducible joining of datasets that use different taxonomic synonyms for the same species.

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databasetaxonomy

4.79 score 22 stars 14 scripts

joholearnr - Tutorials for Joho-shori-enshu Class at Chiba University

Provides {learnr} tutorials as homework assignments for the Joho-shori-enshu Class at Chiba University, Japan.

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2.18 score 9 scripts

ftolr - Data for the Fern Tree of Life (FTOL)

Provides the Fern Tree of Life (FTOL) phylogeny and related data files.

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1.95 score 1 stars 18 scripts